TargetExperimentList-plotPoolPerformance: Plot pool performance of a TargetExperimentList object.

Description Usage Arguments Value Author(s) Examples

Description

plotPoolPerformance plots density and/or box-plot of the analyzed attribute achieved in each PCR pool. These graphics could be displayed together using the ggplot2 geom_violin method.

Usage

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plotPoolPerformance(object, dens = FALSE, join = FALSE, log = TRUE,
    attributeThres = NULL)

## S4 method for signature 'TargetExperimentList'
plotPoolPerformance(object, dens = FALSE,
    join = FALSE, log = TRUE, attributeThres = NULL)

Arguments

object

TargetExperimentList class object.

dens

Logical indicating if density plot should be included

join

Logical indicating if boxplot and density function should be plotted together using the ggplot2 geom_violin method. For it uses, dens should be TRUE.

log

Logical indicating if the attribute should be considered in log10 scale.

attributeThres

Numeric indicating the attribute interval extreme values. It is not a mandatory parameter but if it is specified,then the plots will be colored according to the interval in which falls the attribute median values.

Value

ggplot2 graphics.

Author(s)

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar

Examples

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## Loading the TargetExperimentList object
data(TEList, package="TarSeqQC")
# Attribute boxplot and density plot exploration
g<-plotPoolPerformance(TEList,log=FALSE)
# x11(type="cairo")
if(interactive()){
g
}

gamerino/TarSeqQC documentation built on Feb. 3, 2020, 9:19 p.m.