Files in gamerino/TarSeqQC

TARgeted SEQuencing Experiment Quality Control

R/TarSeqQC-package.R R/TargetExperiment-addStatSummSheet.R R/TargetExperiment-ampliPanel.R R/TargetExperiment-ampliPanel2.R R/TargetExperiment-biasExploration.R R/TargetExperiment-buildFeaturePanel.R R/TargetExperiment-buildReport.R R/TargetExperiment-constructor.R R/TargetExperiment-getters.R R/TargetExperiment-ggplotColours.R R/TargetExperiment-initialize.R R/TargetExperiment-myCounts.R R/TargetExperiment-pileupCounts.R R/TargetExperiment-plot.R R/TargetExperiment-plotAttrExpl.R R/TargetExperiment-plotAttrPerform.R R/TargetExperiment-plotFeatPerform.R R/TargetExperiment-plotFeature.R R/TargetExperiment-plotGeneAttrPerFeat.R R/TargetExperiment-plotInOutFeatures.R R/TargetExperiment-plotMetaDataExpl.R R/TargetExperiment-plotNtdPercentage.R R/TargetExperiment-plotRegion.R R/TargetExperiment-print.R R/TargetExperiment-readFrequencies.R R/TargetExperiment-setters.R R/TargetExperiment-show.R R/TargetExperiment-statistics.R R/TargetExperiment-summarizePanel.R R/TargetExperiment.R R/TargetExperimentList-TEList.R R/TargetExperimentList-constructor.R R/TargetExperimentList-getters.R R/TargetExperimentList-initialize.R R/TargetExperimentList-plot.R R/TargetExperimentList-plotAttrExpl.R R/TargetExperimentList-plotGlobalAttrExpl.R R/TargetExperimentList-plotPoolPerformance.R R/TargetExperimentList-print.R R/TargetExperimentList-setters.R R/TargetExperimentList-show.R R/TargetExperimentList-statistics.R R/TargetExperimentList.R R/checkBedFasta.R inst/extdata/plot.pdf inst/unitTests/test_TarSeqQC.R man/TEList.Rd man/TarSeqQC-package.Rd man/TargetExperiment-biasExploration.Rd man/TargetExperiment-buildFeaturePanel.Rd man/TargetExperiment-buildReport.Rd man/TargetExperiment-class.Rd man/TargetExperiment-constructor.Rd man/TargetExperiment-getters.Rd man/TargetExperiment-initialize.Rd man/TargetExperiment-plot.Rd man/TargetExperiment-plotAttrExpl.Rd man/TargetExperiment-plotAttrPerform.Rd man/TargetExperiment-plotFeatPerform.Rd man/TargetExperiment-plotFeature.Rd man/TargetExperiment-plotGeneAttrPerFeat.Rd man/TargetExperiment-plotMetaDataExpl.Rd man/TargetExperiment-plotNtdPercentage.Rd man/TargetExperiment-plotRegion.Rd man/TargetExperiment-print.Rd man/TargetExperiment-readFrequencies.Rd man/TargetExperiment-setters.Rd man/TargetExperiment-show.Rd man/TargetExperiment-statistics.Rd man/TargetExperiment-summarizePanel.Rd man/TargetExperimentList-class.Rd man/TargetExperimentList-constructor.Rd man/TargetExperimentList-initialize.Rd man/TargetExperimentList-plotGlobalAttrExpl.Rd man/TargetExperimentList-plotPoolPerformance.Rd man/ampliPanel.Rd man/ampliPanel2.Rd man/checkBedFasta.Rd man/myCounts.Rd man/object.Rd man/pileupCounts.Rd man/plotInOutFeatures.Rd tests/runTests.R vignettes/GlobalAttrPool.pdf vignettes/NTDPercAMPL20.pdf vignettes/RETRegion.pdf vignettes/TEList.pdf vignettes/attrExpl.pdf vignettes/attrPerfPool.pdf vignettes/attrPerfPoolThres.pdf vignettes/class.pdf vignettes/coveragePerform.pdf vignettes/featPerf.pdf vignettes/featuregene7.pdf vignettes/gcExploration.pdf vignettes/gene2Exploration.pdf vignettes/gene4AttrFeat.pdf vignettes/gene7Region.pdf vignettes/geneAttrPerFeatOverlap.pdf vignettes/geneExploration.pdf vignettes/lengthExploration.pdf vignettes/perfExplCCP.pdf vignettes/plot.pdf vignettes/plotCPP.pdf vignettes/plotInOut.pdf vignettes/plotNoLab.pdf vignettes/plotTEList.pdf vignettes/poolPerformDens.pdf vignettes/poolPerformThres.pdf