Man pages for gautierstoll/CytoSOM
Easy use of FlowSOM
| BoxPlotMarkerMetaClust | Box plot of one marker MFI, for the different meta-cluster... |
| BoxPlotMetaClust | Statistical comparison of metacluster population between... |
| buildFSOMTree | Build and plot FlowSOM tree |
| DataFromMetaClust | Construct a sub-dataset from dataset and a list of... |
| DownLoadCytoData | Download fcs files and select the population of interest in... |
| FindMetaClustNames | Find each name of metaclusters that contains all sub-names |
| HeatMapTree | Heatmap representation of markers median values in... |
| HistMarkerMetaCl | Histogram representation of a marker in a given meta-cluster,... |
| InteractivePolyGate | interactive gating from data. Mouse click to build polygon,... |
| MetaClusterNaming | Naming of meta-cluster, based on quartile if CutOff is not... |
| Plot2DScatterPlot | Plot2DScatterPlot |
| PlotLabelsRm | Modified PlotLabels function of FlowSOM, with removal of... |
| PlotMarkerMSTCondRm | Modified PlotMarkerMST function of FlowSOM, with removal of... |
| PlotMarkerMSTRm | Modified PlotMarkerMST function of FlowSOM, with removal of... |
| PlotStarsMSTCondRm | Modified PlotStarsMST function of FlowSOM, with removal of... |
| PlotStarsMSTRm | Plot FlowSOM tree with the capacity to remove the smalles... |
| plotTreeSet | Plot a set of trees, in a pdf file, for metaclusters and... |
| PolygonGatingGatedData | Apply a list of gates made of polygon (from function... |
| PolygonGatingRawData | Apply a list of gates made of polygon (from function... |
| ScatterPlotMatrix | ScatterPlotMatrix |
| TreeMetaManualRenaming | Selective naming of metaclustesters according to specific... |
| TreeMetaRenaming | Automatic naming of metaclustesters according to specific... |
