InteractivePolyGate: interactive gating from data. Mouse click to build polygon,...

In gautierstoll/CytoSOM: Easy use of FlowSOM

Description

interactive gating from data. Mouse click to build polygon, right click to exit.

Usage

InteractivePolyGate(
  RawData,
  marker1,
  marker2,
  fcsFiles,
  xlim = NULL,
  ylim = NULL,
  log = ""
)

Arguments

RawData	data from FlowSOM::ReadInput
marker1	x-axis
marker2	y-axis
fcsFiles	list of file names or list of file indices to be used
xlim	limits of x-axis, if NULL, limits set automatically
ylim	limits of y-axis, if NULL, limits set automatically
log	axxis name to be plot in log scale

Value

a polygon with the marker names

gautierstoll/CytoSOM documentation built on May 16, 2020, 10:36 a.m.