Plot2DScatterPlot: Plot2DScatterPlot
In gautierstoll/CytoSOM: Easy use of FlowSOM
Description
Usage
Arguments
Value
Examples
View source: R/Plot2DScatterPlot.R
Description
Plot2DScatterPlot displays a 2D scatter plot of specified markers using the hexbin package.
Usage
1
Plot2DScatterPlot(TreeMetaCl, Title, Marker1, Marker2, mincnt, style)
Arguments
TreeMetaCl
object generated by buildFSOMTree function
Title
title of the 2D scatter plot
Marker1
marker to plot on the abscissa ("x")
Marker2
marker to plot on the ordinate ("y")
style
appareance of the polygons for the plot, that can be "colorscape","nestle.lattice", "nestle.centroids"...
minct
minimun count of cells to display as a polygon on the plot
Value
PDF file of the chosen 2D scatter plot, that is saved in the working directory
Examples
1
Plot2DScatterPlot(CytoTree,"Experiment 1","FSC-A","SSC-A",100,"colorscale")
gautierstoll/CytoSOM documentation built on May 16, 2020, 10:36 a.m.
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Description Usage Arguments Value Examples
View source: R/Plot2DScatterPlot.R
Description
Plot2DScatterPlot displays a 2D scatter plot of specified markers using the hexbin package.
Usage
1 | Plot2DScatterPlot(TreeMetaCl, Title, Marker1, Marker2, mincnt, style)
|
Arguments
TreeMetaCl |
object generated by buildFSOMTree function |
Title |
title of the 2D scatter plot |
Marker1 |
marker to plot on the abscissa ("x") |
Marker2 |
marker to plot on the ordinate ("y") |
style |
appareance of the polygons for the plot, that can be "colorscape","nestle.lattice", "nestle.centroids"... |
minct |
minimun count of cells to display as a polygon on the plot |
Value
PDF file of the chosen 2D scatter plot, that is saved in the working directory
Examples
1 | Plot2DScatterPlot(CytoTree,"Experiment 1","FSC-A","SSC-A",100,"colorscale")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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