MetaClusterNaming: Naming of meta-cluster, based on quartile if CutOff is not...

In gautierstoll/CytoSOM: Easy use of FlowSOM

Description

Naming of meta-cluster, based on quartile if CutOff is not provided

Usage

MetaClusterNaming(TreeMetaCl, Markers, Levels, CutOff = NULL, Short = FALSE)

Arguments

TreeMetaCl	FlowSOM tree with meta-clusters, contructed for buildFSOMTree
Markers	vector of markers used for naming
Levels	number of level for naming: 2 -> -/+ (1/2-4 quartiles), 3-> -/low/high (1/2-3/4 quartiles), 4-> -/low/int/high (1/2/3/4 quartiles)
CutOff	matrix for optional cut off values for naming, with markers in row.names, each column for separating levels. If a marker is not in row.names, quartiles are used
Short	is true, low is not represented with level=3, int is not represented if level=4

Value

data frame with meta-cluster cluster oldName and newName.

gautierstoll/CytoSOM documentation built on May 16, 2020, 10:36 a.m.