R/XMatrixList-methods.r

In ge11232002/TFBSTools: Software Package for Transcription Factor Binding Site (TFBS) Analysis

### -----------------------------------------------------------------
### Getters
### 
setMethod("name", "XMatrixList", function(x) sapply(x, name))
setMethod("ID", "XMatrixList", function(x) sapply(x, ID))
setMethod("matrixClass", "XMatrixList", function(x) sapply(x, matrixClass))
setMethod("Matrix", "XMatrixList", function(x) lapply(x, Matrix))
setMethod("strand", "XMatrixList", function(x) sapply(x, strand))
setMethod("bg", "XMatrixList", function(x) lapply(x, bg))
setMethod("matrixType", "XMatrixList", function(x) sapply(x, matrixType))
setMethod("pseudocounts", "PWMatrixList", function(x) sapply(x, pseudocounts))
setMethod("schneider", "ICMatrixList", function(x) sapply(x, schneider))
setMethod("tags", "XMatrixList", function(x) lapply(x, tags))

### -----------------------------------------------------------------
### showAsCell
### 
setMethod("showAsCell", "XMatrixList", function(object){
  ans <- paste(ID(object), name(object), matrixClass(object), sep="; ")
  return(ans)
})