API for gehara/PipeMaster
Building and Simulating Coalescent models.
| Global functions | |
|---|---|
| H.div | Man page Source code |
| PipeMaster | Man page |
| PlotModel | Man page Source code |
| PopPlanner | Man page Source code |
| anc.Ne.par | Source code |
| anc.mig.par | Source code |
| coexp.MS | Source code |
| coexp.msABC | Source code |
| coexp.sample.pars | Source code |
| coexp.sample.pars.msABC | Source code |
| coexp.sample.pars.pulses | Source code |
| coexp.sample.pars2 | Source code |
| coexp.sumstat | Source code |
| condition.matrix | Source code |
| condition.menu | Source code |
| cur.Ne.par | Source code |
| demog.menu | Source code |
| demog.sample.pars | Source code |
| eval.condition | Source code |
| fasta.snp.2ms | Source code |
| fasta2ms | Source code |
| gene.menu | Source code |
| genomic.menu | Source code |
| genomic.par | Source code |
| genomic.samples.par | Source code |
| get.cond | Source code |
| get.data.structure | Man page Source code |
| get.locfile | Source code |
| get.model | Source code |
| get.msABC | Source code |
| get.node | Source code |
| get.pops | Source code |
| get.prior.table | Man page Source code |
| get.ss.pop.name | Source code |
| get.time | Source code |
| get.tree.info | Man page Source code |
| getrid | Source code |
| iPyrad.alleles.loci2fasta | Man page Source code |
| inv.mirror.lower | Source code |
| inv.mirror.upper | Source code |
| join.par | Source code |
| loci.par | Source code |
| main.menu | Man page Source code |
| mig.menu | Source code |
| mig.par | Source code |
| ms.commander.forplot | Source code |
| ms.commander.snp | Source code |
| ms.commander2 | Source code |
| ms.string.generator | Source code |
| ms.to.DNAbin | Man page Source code |
| msABC.commander | Source code |
| multiplot | Man page Source code |
| obs.sumstat.ngs | Man page Source code |
| observed.coexp.sumstat | Man page Source code |
| observed.pw.distances | Man page Source code |
| observed.singlepop.sumstat | Man page Source code |
| observed.sumstat | Man page Source code |
| parallel.sims | Source code |
| place.mig.condition | Source code |
| place.size.condition | Source code |
| place.time.condition | Source code |
| plot.priors | Man page Source code |
| plot.sim.obs | Man page Source code |
| plotPCs | Man page |
| popassign | Man page |
| print.condition.menu | Source code |
| print.demog.menu | Source code |
| print.gene.menu | Source code |
| print.genomic.menu | Source code |
| print.main.menu | Source code |
| print.mig.menu | Source code |
| print.time.menu | Source code |
| read.model.input | Source code |
| read.ms.string | Source code |
| remove.all.par | Source code |
| sample.mu.rates | Source code |
| sample.pars | Source code |
| sample.w.cond | Source code |
| samples.par | Source code |
| seqs | Man page |
| sim.coaltrees | Man page Source code |
| sim.coexp | Man page Source code |
| sim.coexp.ngs | Man page Source code |
| sim.coexp.pulses | Source code |
| sim.coexpPT | Man page Source code |
| sim.demog | Source code |
| sim.ms.sumstat | Man page Source code |
| sim.msABC.sanger | Man page Source code |
| sim.msABC.sumstat | Man page Source code |
| sim.sp.tree | Man page Source code |
| single.pop.demog | Man page Source code |
| sumstat | Source code |
| switch.condition.menu | Source code |
| switch.demog.menu | Source code |
| switch.gene.menu | Source code |
| switch.genomic.menu | Source code |
| switch.main.menu | Source code |
| switch.mig.menu | Source code |
| switch.time.menu | Source code |
| taxons.to.numbers | Source code |
| time.menu | Source code |
| update.matrix | Source code |
| update.priors | Man page Source code |
