dmps: Simulated dataset of DMPs used in examples

In genomaths/MethylIT: Methylation Analysis Based on Signal Detection

Simulated dataset of DMPs used in examples

Description

Each individuals sample includes 10000 cytosine positions

Usage

dmps

Format

dmps is an object from class 'pDMP' carrying in the meta-columns the following variables:

p1

methylation level from the reference sample

p2

methylation level from the treatment sample

TV

the total variation distance (difference of methylation levels)

hdiv

Hellinger divergence

wprob

the probabilities: wprob = 1 - CDF probability

dmps is an object from class 'pDMP' carrying the same meta-columns as 'HD' (dataset) plus the probabilities: wprob = 1 - CDF probability. DMPs ('dmps') are obtained from potential DMPs (see PS) with selectDIMP function.

genomaths/MethylIT documentation built on Feb. 3, 2024, 1:24 a.m.