ds: Simulated dataset of RangedGlmDataSet class object (DMPs...
In genomaths/MethylIT: Methylation Analysis Based on Signal Detection
ds R Documentation
Simulated dataset of RangedGlmDataSet class object (DMPs counts)
Description
RangedGlmDataSet and glmDataSet are objects carrying the
information on the experimental design for two group comparison of DMP
counts by applying generalized linear regression.
Usage
ds
Format
ds is an RangedGlmDataSet with 125 regions
and 4 columns (individuals) with factor levels 'A' and 'B'. The accessible
objects in the dataset are:
- GR
A GRanges-class object of
length(GR) = 125 with the count matrix of DMPs in the metacolumns.
- counts
Count matrix of DMPs with minimal
dim(ds$counts) = c(125, 4).
- colData
A data frame with one columnn named 'condition'.
- sampleNames
Samples names: "A1" "A2" "B1" "B2"
- levels
Design factor levels: "A" "B"
ds is an object from class RangedGlmDataSet carrying
the information to perform DMG analysis with countTest2
function.
genomaths/MethylIT documentation built on Feb. 3, 2024, 1:24 a.m.
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| ds | R Documentation |
Simulated dataset of RangedGlmDataSet class object (DMPs counts)
Description
RangedGlmDataSet and glmDataSet are objects carrying the information on the experimental design for two group comparison of DMP counts by applying generalized linear regression.
Usage
ds
Format
ds is an RangedGlmDataSet with 125 regions and 4 columns (individuals) with factor levels 'A' and 'B'. The accessible objects in the dataset are:
- GR
A
GRanges-classobject of length(GR) = 125 with the count matrix of DMPs in the metacolumns.- counts
Count matrix of DMPs with minimal dim(ds$counts) = c(125, 4).
- colData
A data frame with one columnn named 'condition'.
- sampleNames
Samples names: "A1" "A2" "B1" "B2"
- levels
Design factor levels: "A" "B"
ds is an object from class RangedGlmDataSet carrying
the information to perform DMG analysis with countTest2
function.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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