hdiv: Simulated dataset of Information divergences used in the...
In genomaths/MethylIT: Methylation Analysis Based on Signal Detection
hdiv R Documentation
Simulated dataset of Information divergences used in the examples
Description
Each individuals sample includes 10000 cytosine positions
Usage
hdiv
Format
'hdiv is an object from class 'InfDiv' with
GRanges-class ascelements carrying in the
meta-columns the following variables:
- c1
Methylated read counts from the reference sample.
- t1
Unmethylated read counts from the reference sample.
- c2
Methylated read counts from the treatment sample.
- t2
Unmethylated read counts from the treatment sample.
- p1
methylation level from the reference sample.
- p2
methylation level from the treatment sample.
- TV
the total variation distance (difference of
methylation levels)
- bay.TV
TV computes with Bayesian correction for the
methelation levels.
- hdiv
Hellinger divergence.
- jdiv
J divergence.
'hdiv' was obtained with function estimateDivergence.
genomaths/MethylIT documentation built on Feb. 3, 2024, 1:24 a.m.
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| hdiv | R Documentation |
Simulated dataset of Information divergences used in the examples
Description
Each individuals sample includes 10000 cytosine positions
Usage
hdiv
Format
'hdiv is an object from class 'InfDiv' with
GRanges-class ascelements carrying in the
meta-columns the following variables:
- c1
Methylated read counts from the reference sample.
- t1
Unmethylated read counts from the reference sample.
- c2
Methylated read counts from the treatment sample.
- t2
Unmethylated read counts from the treatment sample.
- p1
methylation level from the reference sample.
- p2
methylation level from the treatment sample.
- TV
the total variation distance (difference of methylation levels)
- bay.TV
TV computes with Bayesian correction for the methelation levels.
- hdiv
Hellinger divergence.
- jdiv
J divergence.
'hdiv' was obtained with function estimateDivergence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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