Man pages for gersteinlab/siglasso
Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood
| context2spec | Construct the spectrum from a mutation file with context |
| estimate_lasso_parameters | Estimate Lasso regression parameters |
| maf2spec | Construct the spectrum from a MAF file |
| plot_sigs | Visualize the output of siglasso as barplots |
| plot_sigs_grouped | Visualize the output of siglasso, grouped and averaged, as a... |
| plot_spectrum | Visualize mutational spectrums of a sample, or all samples... |
| reverse_context | Get the reverse complementary sequence |
| siglasso | Attributing signatures using sigLASSO |
| siglasso_internal | Internal function for sigLASSO |
| vcf2spec | Construct the spectrum from a VCF file |
