plot_spectrum: Visualize mutational spectrums of a sample, or all samples...
In gersteinlab/siglasso: Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood
View source: R/visualization.R
plot_spectrum R Documentation
Visualize mutational spectrums of a sample, or all samples summarized
Description
Show a plot of mutational spectrums of all samples. That is a plot of
mutation counts catalogued by mutational contexts.
Usage
plot_spectrum(sig_weights, stat = "mean", std96sigs = T)
Arguments
sig_weights
A matrix of mutational counts of different contexts
stat
How to aggregate the spectrums. Choose "mean" or
"median". Default is mean.
std96sigs
Boolean variable, indicating if using 96
contexts and sorted by the contexts (from AC>AA to TT>GT)
gersteinlab/siglasso documentation built on Sept. 5, 2022, 8:45 p.m.
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View source: R/visualization.R
| plot_spectrum | R Documentation |
Visualize mutational spectrums of a sample, or all samples summarized
Description
Show a plot of mutational spectrums of all samples. That is a plot of mutation counts catalogued by mutational contexts.
Usage
plot_spectrum(sig_weights, stat = "mean", std96sigs = T)
Arguments
sig_weights |
A matrix of mutational counts of different contexts |
stat |
How to aggregate the spectrums. Choose "mean" or "median". Default is mean. |
std96sigs |
Boolean variable, indicating if using 96 contexts and sorted by the contexts (from AC>AA to TT>GT) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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