plot_sigs_grouped: Visualize the output of siglasso, grouped and averaged, as a...

In gersteinlab/siglasso: Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood

Visualize the output of siglasso, grouped and averaged, as a dotchart

Description

Show a dotchart of the signature fractions in samples, summarized by groups. If groups are not supplied, it plots every sample

Usage

plot_sigs_grouped(sig_weights, groups, stat = "mean", cex = 0.8, pt.cex = 1.5)

Arguments

sig_weights	A matrix of weigths of signatures in multiple samples
groups	A vector of factors indicating the groups of each samples. If not supplied, it will plot all samples individually
stat	How to aggregate the weights in a group. Choose "mean" or "median". Default is mean.
cex	the character size
pt.cex	the plotting dots size

gersteinlab/siglasso documentation built on Sept. 5, 2022, 8:45 p.m.