MethylMix_Predict: The MethylMix_Predict function
In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation
MethylMix_Predict R Documentation
The MethylMix_Predict function
Description
Given a new data set with methylation data, this function predicts the mixture
component for each new sample and driver gene. Predictions are based on posterior
probabilities calculated with MethylMix'x fitted mixture model.
Usage
MethylMix_Predict(newBetaValuesMatrix, MethylMixResult)
Arguments
newBetaValuesMatrix
Matrix with new observations for prediction,
genes/cpg sites in rows, samples in columns. Although this new matrix can have
a different number of genes/cpg sites than the one provided as METcancer when
running MethylMix, naming of genes/cpg sites should be the same.
MethylMixResult
Output object from MethylMix
Value
A matrix with predictions (indices of mixture component), driver genes in rows, new samples in columns
gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.
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| MethylMix_Predict | R Documentation |
The MethylMix_Predict function
Description
Given a new data set with methylation data, this function predicts the mixture component for each new sample and driver gene. Predictions are based on posterior probabilities calculated with MethylMix'x fitted mixture model.
Usage
MethylMix_Predict(newBetaValuesMatrix, MethylMixResult)
Arguments
newBetaValuesMatrix |
Matrix with new observations for prediction, genes/cpg sites in rows, samples in columns. Although this new matrix can have a different number of genes/cpg sites than the one provided as METcancer when running MethylMix, naming of genes/cpg sites should be the same. |
MethylMixResult |
Output object from MethylMix |
Value
A matrix with predictions (indices of mixture component), driver genes in rows, new samples in columns
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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