Preprocess_CancerSite_Methylation27k: The Preprocess_CancerSite_Methylation27k function
In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation
View source: R/TCGA_Download_Preprocess.R
Preprocess_CancerSite_Methylation27k R Documentation
The Preprocess_CancerSite_Methylation27k function
Description
Internal. Pre-processes DNA methylation data from TCGA from Illymina 27k arrays.
Usage
Preprocess_CancerSite_Methylation27k(
CancerSite,
METdirectory,
doBatchCorrection,
batch.correction.method,
MissingValueThreshold
)
Arguments
CancerSite
character of length 1 with TCGA cancer code.
METdirectory
character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function.
MissingValueThreshold
threshold for removing samples or genes with missing values.
Value
List with pre processed methylation data for cancer and normal samples.
gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.
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View source: R/TCGA_Download_Preprocess.R
| Preprocess_CancerSite_Methylation27k | R Documentation |
The Preprocess_CancerSite_Methylation27k function
Description
Internal. Pre-processes DNA methylation data from TCGA from Illymina 27k arrays.
Usage
Preprocess_CancerSite_Methylation27k(
CancerSite,
METdirectory,
doBatchCorrection,
batch.correction.method,
MissingValueThreshold
)
Arguments
CancerSite |
character of length 1 with TCGA cancer code. |
METdirectory |
character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function. |
MissingValueThreshold |
threshold for removing samples or genes with missing values. |
Value
List with pre processed methylation data for cancer and normal samples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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