TCGA_Download_DNAmethylation: The TCGA_Download_DNAmethylation function

In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation

The TCGA_Download_DNAmethylation function

Description

Download DNA methylation data from TCGA.

Usage

TCGA_Download_DNAmethylation(CancerSite, TargetDirectory, downloadData = TRUE)

Arguments

CancerSite	character of length 1 with TCGA cancer code.
TargetDirectory	character with directory where a folder for downloaded files will be created.
downloadData	logical indicating if data should be downloaded (default: TRUE). If false, the url of the desired data is returned.

Value

list with paths to downloaded files for both 27k and 450k methylation data.

Examples

METdirectories <- TCGA_Download_DNAmethylation(CancerSit = 'OV', TargetDirectory = tempdir())

gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.