TCGA_EstimateMissingValues_MolecularData: The TCGA_EstimateMissingValues_MolecularData function

View source: R/TCGA_Download_Preprocess.R

TCGA_EstimateMissingValues_MolecularDataR Documentation

The TCGA_EstimateMissingValues_MolecularData function

Description

Internal.Deletes samples and genes with more NAs than the respective thresholds. Imputes other NAs values.

Usage

TCGA_EstimateMissingValues_MolecularData(
  MET_Data,
  MissingValueThresholdGene = 0.3,
  MissingValueThresholdSample = 0.1
)

Arguments

MET_Data

matrix of gene expression data

MissingValueThresholdGene

threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.

MissingValueThresholdSample

threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.

Value

gene expression data with no missing values.


gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.