TCGA_EstimateMissingValues_MolecularData: The TCGA_EstimateMissingValues_MolecularData function
In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation
View source: R/TCGA_Download_Preprocess.R
TCGA_EstimateMissingValues_MolecularData R Documentation
The TCGA_EstimateMissingValues_MolecularData function
Description
Internal.Deletes samples and genes with more NAs than the respective thresholds. Imputes other NAs values.
Usage
TCGA_EstimateMissingValues_MolecularData(
MET_Data,
MissingValueThresholdGene = 0.3,
MissingValueThresholdSample = 0.1
)
Arguments
MET_Data
matrix of gene expression data
MissingValueThresholdGene
threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.
MissingValueThresholdSample
threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.
Value
gene expression data with no missing values.
gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.
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View source: R/TCGA_Download_Preprocess.R
| TCGA_EstimateMissingValues_MolecularData | R Documentation |
The TCGA_EstimateMissingValues_MolecularData function
Description
Internal.Deletes samples and genes with more NAs than the respective thresholds. Imputes other NAs values.
Usage
TCGA_EstimateMissingValues_MolecularData(
MET_Data,
MissingValueThresholdGene = 0.3,
MissingValueThresholdSample = 0.1
)
Arguments
MET_Data |
matrix of gene expression data |
MissingValueThresholdGene |
threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3. |
MissingValueThresholdSample |
threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1. |
Value
gene expression data with no missing values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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