TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust: The...

In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation

The TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust function

Description

Internal. Cluster probes into genes.

Usage

TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust(
  Gene,
  ProbeAnnotation,
  MET_Cancer,
  MET_Normal = NULL,
  CorThreshold = 0.4
)

Arguments

Gene	gene.
ProbeAnnotation	data set matching probes to genes.
MET_Cancer	data matrix for cancer samples.
MET_Normal	data matrix for normal samples.
CorThreshold	correlation threshold for cutting the clusters.

Value

List with the clustered data sets and the mapping between probes and genes.

gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.