TCGA_Load_MolecularData: The TCGA_Load_MolecularData function
In gevaertlab/EpiMix: EpiMix: an integrative tool for the population-level analysis of DNA methylation
View source: R/TCGA_Download_Preprocess.R
TCGA_Load_MolecularData R Documentation
The TCGA_Load_MolecularData function
Description
Internal. Reads in gene expression data. Deletes samples and genes with more NAs than the respective thresholds. Imputes other NAs values.
Usage
TCGA_Load_MolecularData(Filename)
Arguments
Filename
name of the file with the data.
MissingValueThresholdGene
threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.
MissingValueThresholdSample
threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.
Value
gene expression data.
gevaertlab/EpiMix documentation built on July 20, 2023, 9:28 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/TCGA_Download_Preprocess.R
| TCGA_Load_MolecularData | R Documentation |
The TCGA_Load_MolecularData function
Description
Internal. Reads in gene expression data. Deletes samples and genes with more NAs than the respective thresholds. Imputes other NAs values.
Usage
TCGA_Load_MolecularData(Filename)
Arguments
Filename |
name of the file with the data. |
MissingValueThresholdGene |
threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3. |
MissingValueThresholdSample |
threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1. |
Value
gene expression data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.