createAnnotation: The function creates FAS annotation for the fasta file of a...

In giangnguyen0709/fCAT: fCAT

Description

The function creates FAS annotation for the fasta file of a core gene in the core set. This annotation file will be saved in each core gene folder and be used then to calculate the cut off value for each score mode.

Usage

createAnnotation(root, coreSet, coreGene)

Arguments

root	The path to the core directory, where the core set is stored within weight_dir, blast_dir, etc.
coreSet	The name of the interested core set. The core directory can contains more than one core set and the user must specify the interested core set. The core set will be stored in the folder core_orthologs in subfolder, specify them by the name of the subfolder
coreGene	The ID of the core gene in the set

Value

none

Examples

coreFolder <- system.file("extdata", "sample", package = "fCAT")
createAnnotation(coreFolder, "test", "530670")

giangnguyen0709/fCAT documentation built on Feb. 10, 2021, 4:31 a.m.