processCoreSet: The function run createAllAnnotation and calculateAllCufoff...

In giangnguyen0709/fCAT: fCAT

Description

The function run createAllAnnotation and calculateAllCufoff to process the core set

Usage

processCoreSet(coreDir, coreSet)

Arguments

coreDir	The path to the core directory, where the core set is stored within weight_dir, blast_dir, etc.
coreSet	The name of the interested core set. The core directory can contains more than one core set and the user must specify the interested core set. The core set will be stored in the folder core_orthologs in subfolder, specify them by the name of the subfolder

Value

none

Examples

coreFolder <- system.file("extdata", "sample", package = "fCAT")
processCoreSet(coreFolder, "test")

giangnguyen0709/fCAT documentation built on Feb. 10, 2021, 4:31 a.m.