updateLength: In the score mode "busco" the tool must calculate the length...
In giangnguyen0709/fCAT: fCAT
Description
Usage
Arguments
Value
Description
In the score mode "busco" the tool must calculate the length of the
founded ortholog sequence to classify it into "complete" or "fragmented".
The function will take the phylogenetic profile and the extended fasta file
of the interested genome as the input. Based on the common ID of the
sequence in each file, the function will calculate the length of the
sequence in the fasta file and update it into the phylogenetic profile as
a new column.
Usage
1
updateLength(pp, exFasta)
Arguments
pp
the phylogenetic profile of the interested genome in data.frame
exFasta
the extended fasta file in form of a vector, with each
element is a line of the file
Value
the phylogenetic profile of the interested genome with updated
length for each ortholog (or for each line)
giangnguyen0709/fCAT documentation built on Feb. 10, 2021, 4:31 a.m.
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Description Usage Arguments Value
Description
In the score mode "busco" the tool must calculate the length of the founded ortholog sequence to classify it into "complete" or "fragmented". The function will take the phylogenetic profile and the extended fasta file of the interested genome as the input. Based on the common ID of the sequence in each file, the function will calculate the length of the sequence in the fasta file and update it into the phylogenetic profile as a new column.
Usage
1 | updateLength(pp, exFasta)
|
Arguments
pp |
the phylogenetic profile of the interested genome in data.frame |
exFasta |
the extended fasta file in form of a vector, with each element is a line of the file |
Value
the phylogenetic profile of the interested genome with updated length for each ortholog (or for each line)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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