handleError: A fail running of fCAT's checkCompleteness function will...

In giangnguyen0709/fCAT: fCAT

Description

A fail running of fCAT's checkCompleteness function will leave behind a copy of the fasta file and the symbolic link of the FAS annotaion of the interested genome. This can cause some warning or crash while rerun the tool. This function will check if the query taxon is empty before the check, if not the function will delete the fasta file in the query taxon and its corresponding annotation file in weight_dir

Usage

handleError(root, weightDir = NULL)

Arguments

root	The path to the core directory, where the core set is stored within weight_dir, blast_dir, etc.
weightDir	The user can replace the weight_dir folder in the core directory by specifying the path to the replacing folder in this argument

Value

none

giangnguyen0709/fCAT documentation built on Feb. 10, 2021, 4:31 a.m.