Man pages for goat-anti-rabbit/labelpepmatch.R
Tools For Interpreting Mass Spectra With Labeled Peptides
| add_id | Manually add an identification from e.g. MS/MS |
| calculate_peptide_mass | Calculate the mass of a peptide. |
| download_lpm_db | Download a peptide database. |
| generate_random_db | Generate a random database of peptides. |
| locustdata | Dataset with TMAB labelled locust peptides. |
| lpm_heatmap | Plot a heatmap. |
| lpm_linearmodel | Linear models for labelpepmatch. |
| lpm_make.RGList | Bridge between labelpepmatch and limma. |
| lpm_MAplot | Plot an MA plot. |
| lpm_mockdata | Generate mock data. |
| lpm_refine | Refine 'pepmatched' objects. |
| lpm_summary | Summary lpm objects. |
| lpm_volcanoplot | Plot a volcano plot. |
| make.statlist | Reorganize a 'pepmatched' object into matrix format. |
| pep.id | Mass match peak pairs from a pepmatched object. |
| pep.massmatch | Mass match a vector of masses to a database. |
| pepmatch | Identify peak pairs. |
| QC_database | Quality check a database. |
| read.labelpepmatch | Read labelpepmatch input. |
| read.progenesis | Read progenesis data. |
| view_spectra | Plot spectra in m/z - retention time space. |
