Description Usage Format Details Author(s) References
Dataset with TMAB labelled locust peptides.
1 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | List of 2
$ frame :'data.frame': 1425 obs. of 26 variables:
..$ id : num [1:1425] 36286 36285 36044 36116 36274 ...
..$ z : num [1:1425] 1 1 1 1 1 1 1 1 2 4 ...
..$ mz_1 : num [1:1425] 1868 580 1160 934 361 ...
..$ mz_2 : num [1:1425] 1868 580 1160 934 361 ...
..$ mz_3 : num [1:1425] 1868 580 1160 934 361 ...
..$ mz_4 : num [1:1425] 1868 580 1160 934 361 ...
..$ mz_5 : num [1:1425] 1868 580 1160 934 361 ...
..$ mz_6 : num [1:1425] 1868 580 1160 934 361 ...
..$ mz_7 : num [1:1425] 1868 580 1160 934 361 ...
..$ mz_8 : num [1:1425] 1868 580 1160 934 361 ...
..$ Quantity_1: num [1:1425] 3252 68516 324316 279604 517488 ...
..$ Quantity_2: num [1:1425] 8164 67744 382124 382000 801112 ...
..$ Quantity_3: num [1:1425] 5696 140180 434388 428184 692692 ...
..$ Quantity_4: num [1:1425] 7056 115140 545744 478340 808132 ...
..$ Quantity_5: num [1:1425] 9080 168324 566776 564280 973372 ...
..$ Quantity_6: num [1:1425] 4444 65364 637096 554152 987188 ...
..$ Quantity_7: num [1:1425] 3212 87568 642764 461484 992424 ...
..$ Quantity_8: num [1:1425] 3572 103852 673296 467448 1030116 ...
..$ Ret_1 : num [1:1425] 33.6 30.7 32.7 33.6 32 ...
..$ Ret_2 : num [1:1425] 33.7 30.8 32.8 33.7 32.1 ...
..$ Ret_3 : num [1:1425] 33.5 30.7 32.5 33.5 31.9 ...
..$ Ret_4 : num [1:1425] 33.7 31 32.9 33.7 32.2 ...
..$ Ret_5 : num [1:1425] 33.8 31 32.9 33.8 32.3 ...
..$ Ret_6 : num [1:1425] 33.5 30.7 32.6 33.5 31.9 ...
..$ Ret_7 : num [1:1425] 33.5 30.8 32.7 33.5 32 ...
..$ Ret_8 : num [1:1425] 33.5 30.8 32.6 33.5 32 ...
$ design:'data.frame': 8 obs. of 5 variables:
..$ RunName : Factor w/ 8 levels "A","B","C","D",..: 1 2 3 4 5 6 7 8
.. ..- attr(*, "names")= chr [1:8] "1" "2" "3" "4" ...
..$ LightCondition: Factor w/ 2 levels "greg","sol": 2 2 1 1 2 2 1 1
.. ..- attr(*, "names")= chr [1:8] "1" "2" "3" "4" ...
..$ HeavyCondition: Factor w/ 2 levels "greg","sol": 1 1 2 2 1 1 2 2
.. ..- attr(*, "names")= chr [1:8] "1" "2" "3" "4" ...
..$ Direction : Factor w/ 2 levels "F","R": 1 1 2 2 1 1 2 2
..$ FileName : Factor w/ 1 level "exported_featuredata_schistoTMAB2011_2015.csv": 1 1 1 1 1 1 1 1
- attr(*, "class")= chr "lpm_input"
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These are peptides from the corpora cardiaca of adult desert locusts (Schistocerca gregaria) labelled with light (D0) and heavy (D9) TMAB. The conditions are sol and greg: solitarious and gregarious animals. Check the design matrix locustdata$design
to have an overview of the labeling. The quantity used here is the peak intensity as determined by Progenesis LC-MS.
Rik Verdonck
Will be published soon.
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