read.labelpepmatch: Read labelpepmatch input.

In goat-anti-rabbit/labelpepmatch.R: Tools For Interpreting Mass Spectra With Labeled Peptides

Description

Read in data in a standard format for labelpepmatch.

Usage

read.labelpepmatch(indata = file.choose(), designvector, sep = "\t",
  dec = ".", samplenames = NA, verbose = FALSE)

Arguments

indata	Character. A table with standard columns: id, z, mz * n, quantity * n and retention time * n
designvector	Character. A vector with the design of the labelling. This is a vector that contains in this exact order: name of first condition, name of second condition, labelling order of first sample, labelling order of second sample, ... labelling order of last sample. The labelling order can either be F (forward, first condition is light), or R (reverse, first condition is heavy).
sep	Character. The field separator of the data you read in. Default is \t
dec	Character. The decimal separator of the data you read in. Default is "."
samplenames	Character. A vector with all the names of the samples.
verbose	Logical. Gives verbose output.

Value

An object of class lpm_input that can serve as an imput to the pepmatch function.

Author(s)

Rik Verdonck

goat-anti-rabbit/labelpepmatch.R documentation built on May 17, 2019, 7:29 a.m.