lpm_heatmap: Plot a heatmap.

Description Usage Arguments Author(s)

View source: R/lpm_heatmap.R

Description

Make a heatmap from an lpm_linearmodel object. Uses the residuals of the null model of the lpm_linearmodel. This is a linear model with label as a main effect, without accounting for treatment. The lpm_heatmap function can be applied both on the raw residuals or on the contrasts within one peak pair.

Usage

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lpm_heatmap(x, contrasts = F, prawcutoff = 0.05, padjcutoff = 0.05,
  FCcutoff = 1.25, main = "heatmap")

Arguments

x

An object of class lpm_linearmodel

contrasts

Logical. Should the heatmap be on the contrasts, or on the residuals?

prawcutoff

Numeric. Cutoff for maximal raw p-value for features to be retained in the heatmap.

padjcutoff

Numeric. Cutoff for maximal adjusted p-value for features to be retained in the heatmap.

FCcutoff

Numeric. Cutoff for minimal log2 fold change.

main

Character. Title of the heatmap.

Author(s)

Rik Verdonck


goat-anti-rabbit/labelpepmatch.R documentation built on May 17, 2019, 7:29 a.m.