Man pages for gogleva/SecretSanta
flexible pipelines for secretome prediction
| ask_uniprot | fetch known subcellular location from UniprotKB based on... |
| CBS_methods | accessor functions for objects of 'CBSResult' S4 class,... |
| check_khdel | check C-terminal ER-retention signals |
| combine_SpResult | combine multiple objects of SignalpResult class |
| combine_TpResult | combine multiple objects of TargetpResult class |
| crop_names | crop_names function |
| ErResult_methods | accessor functions for objects of ErResult S4 class, outputs... |
| estimate_lim | estimate_lim |
| manage_paths | organise and test external dependencies |
| m_slicer | generate proteins with alternative translation start sites |
| parse_signalp | convert output of Signalp-2.0 and Signalp-3.0 to... |
| SecretSanta_man | SecretSanta, main functionality |
| signalp | predict signal peptides |
| SignalpResult_methods | accessor functions for objects of SignalpResult S4 class,... |
| split_XStringSet | split XStringSet objects |
| targetp | predict subcellular protein localization with TargetP |
| TargetpResult_methods | accessor functions for objects of TargetpResult S4 class,... |
| tmhmm | predict transmembrane domains with TMHMM |
| TMhmmResult_methods | accessor functions for objects of TMhmmResult S4 class,... |
| topcons | parse TOPCONS output |
| TopconsResult_methods | accessor functions for objects of TopconsResult S4 class |
| truncate_seq | truncate_seq |
| wolfpsort | predict subcellular protein localization with WoLFpsort |
| WolfResult_methods | accessor functions for objects of WolfResult S4 class,... |
