split_XStringSet: split XStringSet objects
In gogleva/SecretSanta: flexible pipelines for secretome prediction
Description
Usage
Arguments
Value
Examples
View source: R/signalp_parallel.R
Description
This function splits large XStringSet objects into chunks of given size and
returns a list of AAStringSet objects.
Usage
1
split_XStringSet(string_set, chunk_size)
Arguments
string_set
input AAStringSet object;
chunk_size
the number of sequenses in a single chunk;
Value
list of AAStringSet chunks.
Examples
1
2
3
4
5
6
# Read fasta file:
aa <- readAAStringSet(system.file("extdata", "sample_prot_100.fasta",
package = "SecretSanta"))
# Split it into chunks
# with 10 sequences each:
split_XStringSet(aa,10)
gogleva/SecretSanta documentation built on May 30, 2019, 8:02 a.m.
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Description Usage Arguments Value Examples
View source: R/signalp_parallel.R
Description
This function splits large XStringSet objects into chunks of given size and returns a list of AAStringSet objects.
Usage
1 | split_XStringSet(string_set, chunk_size)
|
Arguments
string_set |
input AAStringSet object; |
chunk_size |
the number of sequenses in a single chunk; |
Value
list of AAStringSet chunks.
Examples
1 2 3 4 5 6 | # Read fasta file:
aa <- readAAStringSet(system.file("extdata", "sample_prot_100.fasta",
package = "SecretSanta"))
# Split it into chunks
# with 10 sequences each:
split_XStringSet(aa,10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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