combine_TpResult: combine multiple objects of TargetpResult class

In gogleva/SecretSanta: flexible pipelines for secretome prediction

Description

This function combines multiple instances of TargetpResult class, typically generated with parLapply when running targetp in parallel mode.

Usage

combine_TpResult(arguments)

Arguments

arguments

a list of TargetpResult objects to be combined.

Value

TargetpResult object

Examples

aa <- readAAStringSet(system.file("extdata", "sample_prot_100.fasta",
package = "SecretSanta"))
inp2 <- CBSResult(in_fasta = aa[1:10])
inp3 <- CBSResult(in_fasta = aa[20:30])
inp4 <- CBSResult(in_fasta = aa[40:50])     
tp1 <- targetp(input_obj = inp2, network = 'N', run_mode = 'starter')
tp2 <- targetp(input_obj = inp3, network = 'N', run_mode = 'starter')
tp3 <- targetp(input_obj = inp4, network = 'N', run_mode = 'starter')
obj <- list(tp1, tp2, tp3)
combined_tp <- combine_TpResult(obj)

gogleva/SecretSanta documentation built on May 30, 2019, 8:02 a.m.