API for goodarzilab/Ribolog
Logistic-regression-based analysis of ribosome profiling data
| Global functions | |
|---|---|
| CELP_bias | Man page |
| CELP_detect_bias | Man page |
| TER_all_pairs | Man page Source code |
| add_sd_z | Man page Source code |
| adj_TER_p | Man page Source code |
| bam2count | Man page Source code |
| bamtolist_rW | Man page Source code |
| codon2transcript | Man page |
| codon_barplot | Source code |
| codon_comparative_scatterplot | Source code |
| codon_usage_psite_rW | Source code |
| comb_cor_p | Man page Source code |
| create_te | Man page Source code |
| fit_empirical_null | Source code |
| frame_psite_length_rW | Man page |
| frame_psite_rW | Man page |
| generate_ENZ | Man page Source code |
| generate_correlogram | Man page Source code |
| get_tr_regions | Source code |
| glm_deviance_test_p | Source code |
| gm_mean | Man page Source code |
| gm_mean_z | Man page Source code |
| load_annotation_and_cdna | Source code |
| logit_seq | Man page Source code |
| meta_test | Man page Source code |
| metaprofile_psite_rW | Man page |
| min_count_filter | Man page Source code |
| normalize_median_of_ratios | Man page |
| normalize_median_of_ratios_append | Man page |
| normalize_with_ratios | Source code |
| pairs2correlograms | Man page Source code |
| pairs2pi0s | Man page Source code |
| partition_to_uniques | Man page Source code |
| pca_qc | Man page Source code |
| plot_mirrors_CELP | Man page |
| print_period_region | Man page |
| print_period_region_length | Man page |
| print_read_end_heatmap | Man page |
| print_read_ldist | Man page |
| print_rop | Man page |
| psite_info_rW | Man page |
| psite_rW | Man page |
| psite_to_codon_count | Man page |
| read_annotation | Man page Source code |
| remove_0_1_region_transcripts | Source code |
| remove_low_levels | Source code |
| rends_heat_rW | Man page |
| replace_low_count_transcripts | Source code |
| rlength_distr_rW | Man page |
| row_center | Man page Source code |
| row_standardize | Man page Source code |
| test_ENZ | Man page Source code |
| tr_region_logit_dev | Source code |
| tr_region_multi_logit | Source code |
| visualise_empirical_null | Source code |
| visualize_CELP | Man page |
| visualize_orf_usage | Source code |
| volcano_plot | Source code |
