generate_correlogram: generate_correlogram

In goodarzilab/Ribolog: Logistic-regression-based analysis of ribosome profiling data

generate_correlogram

Description

Function to calculate and plot the correlation matrix of TER test z scores.

Function to calculate and plot the correlation matrix of TER test z scores.

Usage

generate_correlogram(x)

generate_correlogram(x)

Arguments

x	A list of TER test outputs. Each element of the list is a data frame produced by the logit_seq function comparing two samples.
x	A list of TER test outputs. Each element of the list is a data frame produced by the logit_seq function comparing two samples.

Details

Columns 1-4 of each output data frame describe Estimate, SD(Estimate), z score and p-value of the logistic regression intercept. Columns 5-8 of the data frames describe Estimate, SD(Estimate), z score and p-value of the independent variable (predictor) of the TER test. The generate_correlogram function extracts the 7th column from all data frames and calculates and plots their correlation matrix. This function is an internal component of the pairs2correlograms function.

Columns 1-4 of each output data frame describe Estimate, SD(Estimate), z score and p-value of the logistic regression intercept. Columns 5-8 of the data frames describe Estimate, SD(Estimate), z score and p-value of the independent variable (predictor) of the TER test. The generate_correlogram function extracts the 7th column from all data frames and calculates and plots their correlation matrix. This function is an internal component of the pairs2correlograms function.

Value

Correlation matrix of z scores.

Correlation matrix of z scores.

goodarzilab/Ribolog documentation built on Oct. 7, 2022, 10:14 p.m.