frame_psite_length_rW: frame_psite_length_rW

In goodarzilab/Ribolog: Logistic-regression-based analysis of ribosome profiling data

frame_psite_length_rW

Description

Function to plot the percentage of psites falling into each of the three reading frames (periodicity) stratified by length

Usage

frame_psite_length_rW(reads_psite_list, sample = NULL,
  transcripts = NULL, region = "all", cl = 95,
  length_range = "all", plot_title = NULL)

Arguments

reads_psite_list	A reads_psite_list object produced by psite_info_rW
sample	Sample to be plotted.
transcripts	Vector of transcript names to be included. Default: NULL (includes all transcripts).
region	"5utr", "cds", "3utr" or "all". Default: "all".
cl	An integer in [1,100] specifying a confidence level to restrict the plot to a sub-range of read lengths. Use this argument to avoid printing out uncommon read lengths. Default:95.
length_range	Range of read lengths to be included. Default: "all".
plot_title	Title of the plot. Default: NULL.

Examples

print_period_region_length(reads_psite_list_LMCN, "<file.path>/LMCN_Periodicity_by_length_region.pdf")

goodarzilab/Ribolog documentation built on Oct. 7, 2022, 10:14 p.m.