rlength_distr_rW: rlength_distr_rW

In goodarzilab/Ribolog: Logistic-regression-based analysis of ribosome profiling data

rlength_distr_rW

Description

Function to plot ribo-seq read length distribution of a sample.

Usage

rlength_distr_rW(reads_list, sample, transcripts = NULL, cl = 99)

Arguments

reads_list	A reads_list object produced by bamtolist_rW.
sample	Sample name.
transcripts	A vector containing the names of transcripts to be included. Default: NULL (all transcripts are included).
cl	An integer in [1,100] specifying a confidence level to restrict the plot to a sub-range of read lengths. Default: 99. Use this argument to avoid printing out extremely uncommon read lengths. Default:99.

Details

This function produces a read length histogram for the specified sample.

Examples

rlength_distr_rW(reads_list_LMCN, "CN34_r1_rpf")

goodarzilab/Ribolog documentation built on Oct. 7, 2022, 10:14 p.m.