print_rop: print_rop

In goodarzilab/Ribolog: Logistic-regression-based analysis of ribosome profiling data

print_rop

Description

Function to print out ribosome occupancy profiles of all samples to a pdf file

Usage

print_rop(reads_psite_list, annotation, outfile)

Arguments

reads_psite_list	A reads_psite_list object produced by psite_info_rW
annotation	Annotation data table produced by read_annotation listing transcript names and lengths of their 5'UTR, CDS and 3'UTR segments. It has five columns: transcript, l_tr, l_utr5, l_cds and l_utr3. Transcript names and segment lengths must correspond to the reference sequences to which the reads were mapped.
outfile	The path and name of the output pdf file

Details

Ribosome occupancy profiles visualize the positional distribution of reads mapping around start and stop codons.

Examples

print_rop(LMCN_reads_psite_list, annotation_human_cDNA, "<file.path>/LMCN_RPF_ribosome_occupancy_profiles.pdf")

goodarzilab/Ribolog documentation built on Oct. 7, 2022, 10:14 p.m.