print_read_ldist: print_read_ldist

In goodarzilab/Ribolog: Logistic-regression-based analysis of ribosome profiling data

print_read_ldist

Description

Function to print out read length distributions of all samples in a reads_list object to a pdf file.

Usage

print_read_ldist(reads_list, outfile, cl = 99)

Arguments

reads_list	A reads_list object produced by bamtolist_rW.
outfile	The path and name of the output pdf file.
cl	An integer in [1,100] specifying a confidence level to restrict the plot to a sub-range of read lengths. Use this argument to avoid printing out extremely uncommon read lengths. Default: 99.

Details

This function saves the read length histograms of all samples in a reads_list object to a pdf file.

Examples

print_read_ldist(reads_list_LMCN, "<file.path>/LMCN_RPF_Read_length_distributions.pdf")

goodarzilab/Ribolog documentation built on Oct. 7, 2022, 10:14 p.m.