print_period_region: print_period_region

In goodarzilab/Ribolog: Logistic-regression-based analysis of ribosome profiling data

print_period_region

Description

Function to print out psite periodicity by region plots of all samples to a pdf file

Usage

print_period_region(reads_psite_list, outfile)

Arguments

reads_psite_list	A reads_psite_list object produced by psite_info_rW
outfile	The path and name of the output pdf file

Details

These plots illustrate the 3-base (reading frame-dependent) periodicity of reads, separately for 5'UTR, CDS and 3'UTR regions. In a good dataset, psites in the CDS should be enriched for frame 1.

Examples

print_period_region(reads_psite_list_LMCN, "<file.path>/LMCN_Periodicity_by_region.pdf")

goodarzilab/Ribolog documentation built on Oct. 7, 2022, 10:14 p.m.