Description Usage Arguments Value See Also Examples
Do a BLAST search using the QBLAST URL API
1 2 3 |
query |
Query sequences as path to a FASTA file,
an |
db |
The database to BLAST against. |
outfmt |
Output format. One of 'xml' or 'tabular'. See Details. |
max_hits |
The maximum number of hits to return. |
entrez_query |
An Entrez query used to limit the results. |
evalue |
Expectation value threshold for saving hits. |
... |
The name-value pairs of parameters passed on to the QBLAST URL API. |
.params |
A named list of parameters passed on to the QBLAST URL API. |
update_time |
How often to poll the blast server for results. |
program |
The blast application to use. One of 'megablast' (default), 'blastn', 'blastp', 'rpsblast', blastx', 'tblastn', 'tblastx'. |
db |
Blast database name. (defaults: 'nt'). |
A blastReport-class
object.
Other blast functions: blastn
,
blastn_short
, blastn_short
,
dc_megablast
, dc_megablast
,
megablast
, megablast
;
blastp
, blastp_short
,
blastp_short
; blastx
;
makeblasttdb
; rpsblast
;
tblastn
; tblastx
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