scores: Access components of High-Scoring Pairs (HSPs)
In gschofl/blastr: A wrapper for NCBI Blast
Description
Usage
Arguments
Value
Description
Extract the bit score, raw score, or expect values.
Usage
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getBitscore(x, max = FALSE, sum = FALSE)
getMaxBitscore(x)
getTotalBitscore(x)
getScore(x, max = FALSE)
getEvalue(x, max = FALSE)
Arguments
x
A Hsp or HspList.
max
If TRUE return only the highest score.
sum
If TRUE sum scores from all hsps of a BLAST hit.
Value
An numeric vector or a list of numeric vectors.
gschofl/blastr documentation built on May 17, 2019, 8:52 a.m.
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Description Usage Arguments Value
Description
Extract the bit score, raw score, or expect values.
Usage
1 2 3 4 5 6 7 8 9 | getBitscore(x, max = FALSE, sum = FALSE)
getMaxBitscore(x)
getTotalBitscore(x)
getScore(x, max = FALSE)
getEvalue(x, max = FALSE)
|
Arguments
x |
A Hsp or HspList. |
max |
If |
sum |
If |
Value
An numeric vector or a list of numeric vectors.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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