Man pages for gschofl/hlatools
A collection of tools to work with IPD-IMGT/HLA data
| allele_id | Access allele IDs |
| allele_name | Access allele names |
| allele_table | Class: allele_tbl |
| check_remotes | Set remote data checking on of off |
| clone_IMGTHLA | Clone or pull the ANHIG/IMGTHLA repository |
| cwd_status | Access CWD status |
| db_version | Get IPD-IMGT/HLA database version |
| ethnicity | Access ethnicity status |
| exon | Access exon sequences |
| features | Access feature data |
| getFrame | Access feature reading frame |
| getId | Access feature ID |
| getOrder | Access feature order |
| getStatus | Access feature status |
| getType | Access feature type |
| g_group | Access G-group designations |
| g_table | Class: g_tbl |
| hasNext | Does this iterator have a next element |
| HLAAllele | Constructor for HLAAllele objects |
| HLAAllele-class | R6 Class '"HLAAllele"" |
| hla_field1 | Get the first field from a HLA allele code |
| hla_field2 | Get the second field from a HLA allele code |
| HLAGene | Constructor for HLAGene objects. |
| HLAGene_ | R6 Class '"HLAGene"' |
| hla_prefix | Get the HLA allele code prefix |
| HLARanges | Constructor for HLARanges objects |
| HLARanges-class | Class '"HLARanges"' |
| HLARangesList | Constructor for HLARangesList objects |
| HLARangesList-class | Class '"HLARangesList"' |
| hla_sort | Sort HLA alleles by field |
| hlatools-package | A collection of tools to work with IPD-IMGT/HLA data |
| hlatools_version | Get hlatools package version |
| ihasNext | Create an iterator with a hasNext method |
| intron | Access intron sequences |
| is_complete | Access completeness status |
| is_lsl | Has a sequence been submitted by DKMS Life Science Lab |
| iter.IRanges | An IRanges iterator |
| locusname | Access locus name |
| match_alleles | (Partially) match allele names in a HLAGene object. |
| nmdp_table | Class: nmdp_tbl |
| noutr | Access all sequence data except for the UTRs |
| parse_hla_alleles | Parse all HLA alleles for a locus from hla.xml |
| p_group | Access P-group designations |
| pipe | Pipe operator |
| read_hla_xml | Fetch or update the IPD-IMGT/HLA hla.xml file |
| reexports | Objects exported from other packages |
| sample_name | Access (colon-separated) sample names |
| sequences | Access sequence data |
| utr | Access UTR sequences |
