HLAAllele-class: R6 Class '"HLAAllele""

In gschofl/hlatools: A collection of tools to work with IPD-IMGT/HLA data

Description

A container for data parsed from the IPD-IMGT/HLA hla.xml file. Part of a HLAGene object.

Usage

## S4 method for signature 'HLAAllele'
names(x)

## S4 method for signature 'HLAAllele'
length(x)

## S4 method for signature 'HLAAllele'
c(x, ..., recursive = FALSE)

## S4 method for signature 'HLAAllele,numeric,missing,ANY'
x[i, j, ..., drop = TRUE]

## S4 method for signature 'HLAAllele,logical,missing,ANY'
x[i, j, ..., drop = TRUE]

## S4 method for signature 'HLAAllele,character,missing,ANY'
x[i, j, ..., drop = TRUE]

Methods (by generic)

• names: Get sequence names from HLAAlleles.

• length: Get number of HLAAlleles.

• c: Combine HLAAllele objects.

• [: Subset HLAAllele objects.

• [: Subset HLAAllele objects.

• [: Subset HLAAllele objects.

Slots

locusname

A character string.

sequence

A DNAStringSet object.

metadata

A DataFrame object.

features

A HLARangesList object.

See Also

read_hla_xml(), parse_hla_alleles(), HLARanges, HLAGene

Examples

showClass("HLAAllele")

gschofl/hlatools documentation built on July 2, 2021, 10:59 a.m.