HLAGene: Constructor for HLAGene objects.

In gschofl/hlatools: A collection of tools to work with IPD-IMGT/HLA data

Description

Constructor for HLAGene objects.

Usage

HLAGene(
  locusname,
  db_version = "Latest",
  db_path = getOption("hlatools.local_repos"),
  ...
)

Arguments

locusname	<character>; a valid HLA gene name.
db_version	<character>; IPD-IMGT/HLA version (e.g.: 3.28.0, 3.18.0, ...)
db_path	<character>; Location of local IPD-IMGT/HLA repository. Defaults to ‘~/local/db/IMGTHLA’.
...	Passed on to the initialiser.

Value

A HLAGene object.

Examples

## Not run: 
x <- HLAGene("DPB1")
db_version(x)
locusname(x)
length(x)

## extract alleles with complete sequences
x[is_complete(x)]

## extract all Common alleles
x[cwd_status(x) == "Common"]

## End(Not run)

gschofl/hlatools documentation built on July 2, 2021, 10:59 a.m.