LBE_fluo3D_zones_volume: Extraction of polygons volumes, as defined by zones().

Description Usage Arguments Examples

Description

Extraction of polygons volumes, as defined by zones().

Usage

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LBE_fluo3D_zones_volume(data_list = data_interpol, xy_vector_ = xy_vector,
  sample_name_ = sample_name, directory = directory_processing,
  zones_polygons_ = "Default")

Arguments

data_list

The default value of "data_interpol" is assuming that "LBE_fluo3D_processing" have just been used. Otherwise a list containing x=vector of emission wavelenghts, y=vector of excitation wavelenghts, z= a matrix containing the z values (intensity) where X must be the lines, Y must be the columns and Z must be the values of the table.

xy_vector_

The default value of "xy_vector" is assuming that "LBE_fluo3D_processing" have just been used.

sample_name_

Default is the output from processing function. Better not change it.

directory

Default is the working directory. Better not change it.

zones_polygons_

Default corresponds to the 7 zones defined in Jimenez et. al 2015. Otherwise, you must provide a data frame object containing three columns: one "id" column where you identify your zones for each xy coordinate. one "x" column where you put all the x coordinates (emission wavelenght). one "y" column where you put evey y coordinate (excitation wavelenght). The points of a polygon must be ordered in a way that the polygon is "closed" and must include repete the first point as a final point.

Examples

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setwd(XXXX) #XXX is your directory contaning the .sp files (copy and paste from the brownse and replace all the "\" by "/").
LBE_fluo3D_processing() #include your options if you want.
emission_spectrum(420) #export pdf of a emission spectrum plot at excitation = 420 nm

guilayn/lbe3df documentation built on May 30, 2019, 7:20 p.m.