Description Usage Arguments Examples
Extraction of 2D excitation spectrum, given any emission wavelenght.
1 2 3 4 | excitation_spectrum(select_emission = 254, data_list = data_interpol,
excitation_range = data_interpol$y, area_under_graph = F,
start_exci = 200, end_exci = 400, export_pdf = T, export_png = F,
directory = directory_processing, sample_name_ = sample_name)
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select_emission |
Selected emission wavelenght in nm. An excitation spectrum will be generated for this specific emission. Default is 350 for exampling purposes. |
data_list |
The default value of "data_interpol" is assuming that "LBE_fluo3D_processing" have just been used. Otherwise a list containing x=vector of emission wavelenghts, y=vector of excitation wavelenghts, z= a matrix containing the z values (intensity) where X must be the lines, Y must be the columns and Z must be the values of the table. |
excitation_range |
The default value of "data_interpol$y" is assuming that "LBE_fluo3D_processing" have just been used. Otherwise it must be a vector containing the excitation wavelenghts range. |
area_under_graph |
TRUE or FALSE. If any calculation of area under curve will be performed. |
start_exci |
Excitation start if area_under_graph is TRUE. |
end_exci |
Excitation end if area_under_graph is TRUE. |
export_pdf |
TRUE or FALSE. |
export_png |
TRUE or FALSE. |
directory |
Default is the working directory. Better not change it. |
sample_name_ |
Default is the output from processing function. Better not change it. |
1 2 3 | setwd(XXXX) #XXX is your directory contaning the .sp files (copy and paste from the brownse and replace all the "\" by "/").
LBE_fluo3D_processing() #include your options if you want.
excitation_spectrum(420) #export pdf of a excitation spectrum plot at emission = 420 nm
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