excitation_spectrum: Extraction of 2D excitation spectrum, given any emission...

Description Usage Arguments Examples

Description

Extraction of 2D excitation spectrum, given any emission wavelenght.

Usage

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excitation_spectrum(select_emission = 254, data_list = data_interpol,
  excitation_range = data_interpol$y, area_under_graph = F,
  start_exci = 200, end_exci = 400, export_pdf = T, export_png = F,
  directory = directory_processing, sample_name_ = sample_name)

Arguments

select_emission

Selected emission wavelenght in nm. An excitation spectrum will be generated for this specific emission. Default is 350 for exampling purposes.

data_list

The default value of "data_interpol" is assuming that "LBE_fluo3D_processing" have just been used. Otherwise a list containing x=vector of emission wavelenghts, y=vector of excitation wavelenghts, z= a matrix containing the z values (intensity) where X must be the lines, Y must be the columns and Z must be the values of the table.

excitation_range

The default value of "data_interpol$y" is assuming that "LBE_fluo3D_processing" have just been used. Otherwise it must be a vector containing the excitation wavelenghts range.

area_under_graph

TRUE or FALSE. If any calculation of area under curve will be performed.

start_exci

Excitation start if area_under_graph is TRUE.

end_exci

Excitation end if area_under_graph is TRUE.

export_pdf

TRUE or FALSE.

export_png

TRUE or FALSE.

directory

Default is the working directory. Better not change it.

sample_name_

Default is the output from processing function. Better not change it.

Examples

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setwd(XXXX) #XXX is your directory contaning the .sp files (copy and paste from the brownse and replace all the "\" by "/").
LBE_fluo3D_processing() #include your options if you want.
excitation_spectrum(420) #export pdf of a excitation spectrum plot at emission = 420 nm

guilayn/lbe3df documentation built on May 30, 2019, 7:20 p.m.