check_folders: 3D Fluorescence spectrum processing

Description Usage Arguments Examples

Description

This function simply checks the conformity of a folder containing Fluo3D .sp files.

Usage

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check_folders(first_spectrum_line = 55, excitation_spectrum_line = 22,
  excitation_start = 200, excitation_end = 590, excitation_step = 10,
  emission_start = 200, emission_end = 600, emission_step = 0.5,
  directory = getwd())

Arguments

first_spectrum_line

Normally you shouldn't change this. It is the first line containing the spectrum in the .sp files, 55 by default

excitation_spectrum_line

Normally you shouldn't change this. It is the line containing the selected excitation in the .sp files, 22 by default

excitation_start

Default = 200. Only change if you are not using the default scan3D method. Otherwise, it is your first excitation wavelenght (nm).

excitation_end

Default = 590. Only change if you are not using the default scan3D method. Otherwise, it is your last excitation wavelenght (nm).

excitation_step

Default = 10. Only change if you are not using the default scan3D method. Change to 20 might be useful if you are running the fast method. Otherwise, it is your excitation step (nm).

emission_start

Default = 200. See excitation_start for details. Your first emission wavelenght (nm).

emission_end

Default = 600 See excitation_start for details. Your last emission wavelenght (nm).

emission_step

Default = 0.5. See excitation_step for details.

directory

Default is the working directory. Better not change it.

Examples

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guilayn/lbe3df documentation built on May 30, 2019, 7:20 p.m.