IrisSpatialFeatures-package: IrisSpatialFeatures: A package to extract spatial features...
In gusef/IrisSpatialFeatures: A package to extract spatial features based on multiplex IF images
Description
Iris reads the output of the PerkinElmer inForm software and calculates
a variety of spatial statistics. In addition to simple counts, it can
derive average nearest neighbors for each cell-type and interaction
summary profiles for each celltype. These statistics are derived across
images, both overall and regions of interest as defined by user defined
masks.
Author(s)
Daniel Gusenleitner Daniel_Gusenleitner@dfci.harvard.edu
gusef/IrisSpatialFeatures documentation built on May 6, 2019, 9:50 p.m.
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Description
Iris reads the output of the PerkinElmer inForm software and calculates a variety of spatial statistics. In addition to simple counts, it can derive average nearest neighbors for each cell-type and interaction summary profiles for each celltype. These statistics are derived across images, both overall and regions of interest as defined by user defined masks.
Author(s)
Daniel Gusenleitner Daniel_Gusenleitner@dfci.harvard.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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