Files in gusef/IrisSpatialFeatures
A package to extract spatial features based on multiplex IF images

.Rbuildignore
.gitignore
DESCRIPTION
Dockerfile
IrisSpatialFeatures.Rproj
LICENSE
NAMESPACE
R/IrisSpatialFeatures.R R/RcppExports.R R/classes.R R/counting.functions.R R/data.R R/feature.selection.R R/interactions.analysis.R R/nearest.neighbor.R R/normalized.nearest.neighbor.R R/plotting.functions.R R/proximity.analysis.R R/read.functions.R R/threshold.functions.R R/transform.functions.R README.md
data/IrisSpatialFeatures_data.RData
inst/NEWS
inst/doc/IrisSpatialFeatures.pdf
inst/extdata/MEL2/MEL2_080416_2_Invasive_Margin.tif
inst/extdata/MEL2/MEL2_080416_2_Tumor.tif
inst/extdata/MEL2/MEL2_080416_2_cell_seg_data.txt
inst/extdata/MEL2/MEL2_080416_2_cell_seg_data_summary.txt
inst/extdata/MEL2/MEL2_080416_2_memb_seg_map.tif
inst/extdata/MEL2/MEL2_080416_2_score_data.txt
inst/extdata/MEL2/MEL2_080416_7_Invasive_Margin.tif
inst/extdata/MEL2/MEL2_080416_7_Tumor.tif
inst/extdata/MEL2/MEL2_080416_7_cell_seg_data.txt
inst/extdata/MEL2/MEL2_080416_7_cell_seg_data_summary.txt
inst/extdata/MEL2/MEL2_080416_7_memb_seg_map.tif
inst/extdata/MEL2/MEL2_080416_7_score_data.txt
inst/extdata/MEL3/MEL3_120116_1_Invasive_Margin.tif
inst/extdata/MEL3/MEL3_120116_1_Tumor.tif
inst/extdata/MEL3/MEL3_120116_1_cell_seg_data.txt
inst/extdata/MEL3/MEL3_120116_1_cell_seg_data_summary.txt
inst/extdata/MEL3/MEL3_120116_1_memb_seg_map.tif
inst/extdata/MEL3/MEL3_120116_1_score_data.txt
inst/extdata/MEL3/MEL3_120116_2_Invasive_Margin.tif
inst/extdata/MEL3/MEL3_120116_2_Tumor.tif
inst/extdata/MEL3/MEL3_120116_2_cell_seg_data.txt
inst/extdata/MEL3/MEL3_120116_2_cell_seg_data_summary.txt
inst/extdata/MEL3/MEL3_120116_2_memb_seg_map.tif
inst/extdata/MEL3/MEL3_120116_2_score_data.txt
man/Coordinate-class.Rd man/ImageSet-class.Rd man/IrisSpatialFeatures-package.Rd man/IrisSpatialFeatures_data.Rd man/NNN-class.Rd man/NNN_Compare-class.Rd man/Sample-class.Rd man/aggregated_nn_data_frame.Rd man/as.data.frame.Rd man/binned_gated_nn_data_frame.Rd man/collapse_markers.Rd man/compare_normalized_nearest_neighbor.Rd man/counts_data_frame.Rd man/counts_per_mm2_data_frame.Rd man/counts_per_mm2_sample_data_frame.Rd man/counts_sample_data_frame.Rd man/extract_ROI.Rd man/extract_features.Rd man/extract_interactions.Rd man/extract_mask.Rd man/extract_nearest_neighbor.Rd man/extract_proximity.Rd man/feature_selection.Rd man/get_all_interactions.Rd man/get_all_nearest_neighbors.Rd man/get_all_proximities.Rd man/get_count_ratios.Rd man/get_counts_per_mm2.Rd man/get_counts_per_mm2_noncollapsed.Rd man/get_interactions.Rd man/get_nearest_neighbors.Rd man/get_proximities.Rd man/interaction_counts_data_frame.Rd man/interaction_counts_sample_data_frame.Rd man/interaction_maps.Rd man/interactions_sample_data_frame.Rd man/neighbor_ray_plot.Rd man/nn.test.Rd man/nn_comparison_dataframe.Rd man/nn_data_frame.Rd man/normal_nearest_neighbor.Rd man/normal_nearest_neighbor_sample.Rd man/normal_nearest_neighbor_sample_once.Rd man/overview_plot.Rd man/plot.Rd man/plot_interactions.Rd man/plot_nearest_neighbor.Rd man/plot_nnn.Rd man/plot_proximities.Rd man/raw_data-class.Rd man/rayplot_single_coordinate.Rd man/read_raw.Rd man/threshold_dataset.Rd
src/RcppExports.cpp
src/interaction.cpp
src/masking.cpp
tests/testthat.R tests/testthat/test-workflow.R vignettes/IrisSpatialFeatures.Rmd
gusef/IrisSpatialFeatures documentation built on June 14, 2018, 9:14 a.m.