API for gusef/IrisSpatialFeatures
A package to extract spatial features based on multiplex IF images

Global functions
ANY,ANY-method Man page Man page Man page Man page
Coordinate Man page
Coordinate-class Man page
ImageSet Man page
ImageSet-class Man page
IrisSpatialFeatures Man page
IrisSpatialFeatures-package Man page Man page
IrisSpatialFeatures_data Man page
NNN Man page
NNN-class Man page
NNN_Compare-class Man page
NNN_compare Man page
Sample Man page
Sample-class Man page
aggregated_nn_data_frame Man page
aggregated_nn_data_frame,ImageSet-method Man page
as.data.frame,ImageSet-method Man page
as.data.frame,NNN-method Man page
binned_gated_nn_data_frame Man page
binned_gated_nn_data_frame,ImageSet-method Man page
collapse_markers Man page
collapse_markers,ANY,ANY-method Man page
collapse_markers,ImageSet-method Man page
compare_normalized_nearest_neighbor Man page
compare_normalized_nearest_neighbor,NNN,character,character,char Man page
counts_data_frame Man page
counts_data_frame,ANY,ANY-method Man page
counts_data_frame,ImageSet-method Man page
counts_per_mm2_data_frame Man page
counts_per_mm2_data_frame,ANY,ANY-method Man page
counts_per_mm2_data_frame,ImageSet-method Man page
counts_per_mm2_sample_data_frame Man page
counts_per_mm2_sample_data_frame,ANY,ANY-method Man page
counts_per_mm2_sample_data_frame,ImageSet-method Man page
counts_sample_data_frame Man page
counts_sample_data_frame,ANY,ANY-method Man page
counts_sample_data_frame,ImageSet-method Man page
extract.nearest.neighbor,ANY,ANY-method Man page Man page Man page Man page
extract_ROI Man page
extract_ROI,ANY,ANY-method Man page
extract_ROI,ImageSet-method Man page
extract_features Man page
extract_features,ANY,ANY-method Man page
extract_features,ImageSet-method Man page
extract_interactions Man page
extract_interactions,ANY,ANY-method Man page
extract_interactions,ImageSet-method Man page
extract_mask Man page
extract_nearest_neighbor Man page
extract_nearest_neighbor,ImageSet-method Man page
extract_proximity Man page Man page
extract_proximity,ImageSet-method Man page Man page
feature_selection Man page
get_all_interactions Man page
get_all_interactions,ANY,ANY-method Man page
get_all_interactions,ImageSet-method Man page
get_all_nearest_neighbors Man page
get_all_nearest_neighbors,ANY,ANY-method Man page
get_all_nearest_neighbors,ImageSet-method Man page
get_all_proximities Man page Man page
get_all_proximities,ANY,ANY-method Man page Man page
get_all_proximities,ImageSet-method Man page Man page
get_count_ratios Man page
get_count_ratios,ANY,ANY-method Man page
get_count_ratios,ImageSet-method Man page
get_counts_per_mm2 Man page
get_counts_per_mm2,ImageSet-method Man page
get_counts_per_mm2_noncollapsed Man page
get_counts_per_mm2_noncollapsed,ANY,ANY-method Man page
get_counts_per_mm2_noncollapsed,ImageSet-method Man page
get_interactions Man page
get_interactions,ANY,ANY-method Man page
get_interactions,ImageSet-method Man page
get_nearest_neighbors Man page
get_nearest_neighbors,ANY,ANY-method Man page
get_nearest_neighbors,ImageSet-method Man page
get_proximities Man page Man page
get_proximities,ANY,ANY-method Man page Man page
get_proximities,ImageSet-method Man page Man page
interaction_counts_data_frame Man page
interaction_counts_data_frame,ANY,ANY-method Man page
interaction_counts_data_frame,ImageSet-method Man page
interaction_counts_sample_data_frame Man page
interaction_counts_sample_data_frame,ANY,ANY-method Man page
interaction_counts_sample_data_frame,ImageSet-method Man page
interaction_maps Man page
interaction_maps,ANY,ANY-method Man page
interaction_maps,ImageSet-method Man page
interaction_permutation_test Man page
interaction_permutation_test,ANY,ANY-method Man page
interaction_permutation_test,ImageSet-method Man page
interaction_proportion_comparison_permutation_test Man page
interaction_proportion_comparison_permutation_test,ANY,ANY-metho Man page
interaction_proportion_comparison_permutation_test,ImageSet-meth Man page
interaction_proportion_data_frame Man page
interaction_proportion_data_frame,ANY,ANY-method Man page
interaction_proportion_data_frame,ImageSet-method Man page
interactions_sample_data_frame Man page
interactions_sample_data_frame,ANY,ANY-method Man page
interactions_sample_data_frame,ImageSet-method Man page
multiple_proximity_sample_data_frame Man page
multiple_proximity_sample_data_frame,ANY,ANY-method Man page
multiple_proximity_sample_data_frame,ImageSet-method Man page
neighbor.ray.plot,ANY,ANY-method Man page
neighbor_ray_plot Man page
neighbor_ray_plot,ImageSet-method Man page
nn.test Man page
nn.test,ImageSet,character,character,character-method Man page
nn_comparison_dataframe Man page
nn_comparison_dataframe,ImageSet,character,character,character,l Man page
nn_comparison_permutation_test Man page
nn_comparison_permutation_test,ImageSet,character,character,char Man page
nn_data_frame Man page
nn_data_frame,ImageSet-method Man page
normal.nearest.neighbor,ANY,ANY-method Man page
normal.nearest.neighbor.sample,ANY,ANY-method Man page
normal.nearest.neighbor.sample.once,ANY,ANY-method Man page
normal_nearest_neighbor Man page
normal_nearest_neighbor,ImageSet-method Man page
normal_nearest_neighbor_sample Man page
normal_nearest_neighbor_sample,character,ImageSet-method Man page
normal_nearest_neighbor_sample_once Man page
normal_nearest_neighbor_sample_once,character,ImageSet-method Man page
overview_plot Man page
overview_plot,ANY,ANY-method Man page
overview_plot,ImageSet-method Man page
plot,ImageSet-method Man page
plot_interactions Man page
plot_interactions,ANY,ANY-method Man page
plot_interactions,ImageSet-method Man page
plot_nearest_neighbor Man page
plot_nearest_neighbor,ANY,ANY-method Man page
plot_nearest_neighbor,ImageSet-method Man page
plot_nnn Man page
plot_nnn,tbl_df-method Man page
plot_proximities Man page Man page
plot_proximities,ANY,ANY-method Man page Man page
plot_proximities,ImageSet-method Man page Man page
proximity_sample_data_frame Man page
proximity_sample_data_frame,ImageSet-method Man page
raw_data Man page
raw_data-class Man page
rayplot_single_coordinate Man page
rayplot_single_coordinate,Coordinate-method Man page
read_raw Man page
read_raw,ANY,ANY-method Man page
read_raw,character-method Man page
run_proximity,ANY,ANY-method Man page Man page Man page
shuffle_labels Man page
shuffle_labels,ImageSet-method Man page
threshold_dataset Man page
threshold_dataset,ANY,ANY-method Man page
threshold_dataset,ImageSet-method Man page
gusef/IrisSpatialFeatures documentation built on May 6, 2019, 9:50 p.m.