extract_features: Extract all spatial features
In gusef/IrisSpatialFeatures: A package to extract spatial features based on multiplex IF images
Description
Usage
Arguments
Value
Examples
Description
Extract all spatial features
Usage
1
2
3
4
extract_features(x, ...)
## S4 method for signature 'ImageSet'
extract_features(x, name = "", rm.na = FALSE)
Arguments
x
IrisSpatialFeatures ImageSet object
...
Additional arguments
name
Prefix for all features, e.g. 'invasive_margin' (Default: ”)
rm.na
Should features with NA values be removed (Default: FALSE)
Value
dataframe of features
Examples
1
2
3
4
5
6
#' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_nearest_neighbor(dataset,min_num_cells=2)
dataset <- extract_proximity(dataset,only_closest=TRUE,radii=25)
dataset <- extract_interactions(dataset)
extract_features(dataset)
gusef/IrisSpatialFeatures documentation built on May 6, 2019, 9:50 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Extract all spatial features
Usage
1 2 3 4 | extract_features(x, ...)
## S4 method for signature 'ImageSet'
extract_features(x, name = "", rm.na = FALSE)
|
Arguments
x |
IrisSpatialFeatures ImageSet object |
... |
Additional arguments |
name |
Prefix for all features, e.g. 'invasive_margin' (Default: ”) |
rm.na |
Should features with NA values be removed (Default: FALSE) |
Value
dataframe of features
Examples
1 2 3 4 5 6 | #' #loading pre-read dataset
dataset <- IrisSpatialFeatures_data
dataset <- extract_nearest_neighbor(dataset,min_num_cells=2)
dataset <- extract_proximity(dataset,only_closest=TRUE,radii=25)
dataset <- extract_interactions(dataset)
extract_features(dataset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.